From a vcf SNP file to a phylogenetic tree

Question

[Picasa]

Hi everybody,

I have made a vcf file with GATK that include SNPs from 10 samples.

My goal is to make a phylogenetic tree of SNPs,

Can you redirect me toward a ressource than explain what is the possibilities from a VCF file ?.

I have imagined making a fasta file and feed it to phylogenetic inference tool such as RAxML.

Did you guys have experienced with this kind of work ?

Thanks a lot.

[GenoMax]

I will link only one thread here: How To Construct Phylogenetic Tree Using Snps

If you look to the right (-->) then under similar posts you will find other similar threads.

Answer 1

[leeandroid]

Try http://chibba.pgml.uga.edu/snphylo/