Functional annotation of VCF files
Hello everyone, I would like to know which tool or method to use to perform functional annotation of VCF files. My VCF files contain ensembl gene ids I need the gene ontology and other info for the same. Your suggestions would be really helpful.
Thanks in advance.
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Sowmya Pulapet •
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Sowmya Pulapet •
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Hi! Are you familiar with the command line? If not, maybe a good starting point for functional annotation is VEP webinterface. If you are familiar with command line tools I'd recommend downloading VEP in your computer. Snpeff is also a nice alternative.