PCA analysis of two population
Hi everyone,
I want to perform PCA analyses to test if my two populations are genetically different or not. I used to do it with PLINK but in this case I have less than 50 samples and 40.000 SNPs. I can't calculate AF with less than 50 samples with PLINK.
Do you know any workaround? Or eventually, a better analysis to test this genetic difference.
Thank you in advice!
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qstefano •
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