pathway analysis of cell clusters in single-cell RNA-sequencing data
Hello,
Which tool would you suggest for pathway analysis of cell clusters in single-cell RNA-sequencing data?
Has anyone used ReactomeGSA package or scTPA (http://sctpa.bio-data.cn/sctpa)?
Thank you
• 994 views
•
link
updated
by
jv
•
written
by
kgiannikou •
•
written
by
kgiannikou •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Is there a benchmark analysis for the best tool for multiome single-cell RNA+ATAC data analysis?
written by Dan •
-
Is there a package that can do downstream analysis of single-cell V(D)J sequencing?
written by Dan •
-
Copy Number analysis in 10X Visium data
written by kgiannikou •
-
Pathway analysis of a seurat object with gage in R
written by mfro •
-
scRNA and stemness score
written by a511512345
-
Single cell RNA sequencing differential gene expression analysis
written by bioinformatics •
-
ScRNA seq differential gene expression analysis workflow
written by bioinformatics •
-
Pathway enrichment analysis vs GSEA for single cell RNA sequencing data analysis
written by aa123 •
-
pathway for single cell RNA-seq
written by kanwarjag
-
IsoDE-bootstrap based differential gene expression analysis for RNASeq data,without replicates
written by mirza
I haven't used those specific packages but you might also want to look at GSVA https://www.bioconductor.org/packages/release/bioc/html/GSVA.html