Illumina base space
Hello,
How to transfer Fastq files from illumina base space to AWS cloud9?
aws
illumina
• 1,491 views
•
link
updated
by
brunobsouzaa
•
written
by
drajangirija •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How can I visualize the Pileup to determine if there is a 5 BP deletion?
written by screadore •Hello everyone, I'm currently trying to visualize the pileup of a sample to determine if there is a 5 Base Pair deletion and if there …
-
FastQ ColorSpace to BaseSpace format in 2018
written by ZheFrenchNowadays, is there a good way to convert colorSpace fastq from ABI platform to base space format ? Or at least, to align them in …
-
Convert colorspace fastq to basespace fastq
written by aflrios •Convert Solid color space fastq in base space fastq Hi all I am a beginner in NGS. I downloaded some SRA files (from SRA-NCBI) and, …
-
Counting number of reads and bases fastQ with python
written by ChvatilHi all, does someone know a way to count a many base are in a fastaQ file and how many read as well? (R1 and …
-
Open source alternatives to SureCell RNA Single-Cell App in Basespace?
written by greener •I have some single Cell data obtained from a ddseq / Illumina. I would prefer to process this data on my linux server instead of …
-
Base pair order in sequencer vs in fastq
written by DVAFor illumina platform, after the reads bind to the chip and bridge amplified, machine reads each read from top to bottom. I am wondering how …
-
editing lane number in number of fastq files
written by rob.costa1234I want to edit lane numbers in fastq files as core ran into different lanes, base space will not recognize different lane numbers. What may …
-
How to convert fastq to sra?
written by ChillarAnand •NCBI stores data in .sra format. We can download it and convert it into fastq format using `fastq-dump` from SRA toolkit. However I want to …
-
Converting ION torrent .BAM to Fastq
written by alok.helix<p>Hello Colleagues,</p> <p>I have a set of files generated by ion torrent server. It seems that the server produces a fastq file in the BAM …
-
How Can I Find Out Unknown Illumina Barcode.
written by samsara<p>I have fastq file with undetermined reads from Illumina HiSeq. The reads in fastq file contains illumina barcode. I do now know what barcode has …
Why not ask Illumina, you're paying for their support ? I have no idea but don't think there are many basespace users here.
Wanted to add some color to this, we use base space specifically for run monitoring but keep all data locally. I've always wondered if people used base space for storage and I guess we have our answer!
The fastest way will be using their CLI to do that. Check here