GATK 4.2.4.0 & GRCH38, exome pipeline gives plenty of false call? Is it problem of Haplotype caller? or else anything?

How can i resolve the issue

gatk

• 807 views • link

updated 4.1 years ago by Pierre Lindenbaum

• written 4.1 years ago by rajesh.msch •

define

exome pipeline gives plenty of false call

show the commands.

also: How To Ask Good Questions On Technical And Scientific Forums

• 0 views • link

written 4.1 years ago by Pierre Lindenbaum

0 answers

No answers yet.

More posts like this

PPI Network Analysis of Virulence Genes in Morganella morganii Using STRING Database
written 1.4 years ago by bioinfo_enthusiast •

Hello everyone, I have sequenced the genome of Morganella morganii and identified virulence genes using VFDB. Now, I want PPI analysis using STRING database. However, …
How to dock compounds with Si to a protein using Autodock vina?
written 2.5 years ago by Akhilesh •

I have been trying to dock compounds consisting silicon(Ex-Octaphenylsilsesquioxane) with a protein but Pyrx throws up an error saying "Si" is not a valid Autodock …
Mauve: "failed getting file size: value too large for defined data type"
written 5.1 years ago by Ak •

I'm trying to use Mauve to align 2 genomes but it kept on coming out as this: ![ ][1] [1]: /media/images/0548e016-b650-4f7a-9929-9d0821d6 Does anyone know how …
DESeq2 for Differential gene expression
written 6.1 years ago by sana777munquad •

Hi Currently I am working on differential gene expression and using DESeq2 package but during execution I got error that expression values should be integer …
Error with Formatdb of legacy blast?
written 6.9 years ago by DanielC

Dear Friends, When running formatdb like this: blast/bin/formatdb -o T -i nr_pfilt [formatdb] ERROR: Using 1000000000 bases per volume will exceed the maximum number of …
bcftools concatenation error
written 7.4 years ago by GK1610

I have 22 vcf files from each chromosomes. I am try ing to concatenate the vcf files bcftools concat -f files.txt -Oz > merged.vcf I …
Error in lmfit : row dimension of design doesn't match column dimension of data object
written 9.4 years ago by muhammadzubair777 •

anyone can help to resolve this issue. > fit = lmFit(gse28403eset,design_gse28403) >Error in lmFit(gse28403eset, design_gse28403) : row dimension of design doesn't match column dimension of …
problem in running vcf-consensus command
written 9.5 years ago by rajesh.msch •

Hi, I would like to create consensus sequence for an individual from 1000G where the sequence incorporates variants typed for this individual. Using tabix and …
problem in running vcf-consensus command
written 9.5 years ago by rajesh.msch •

Hi, I would like to create consensus sequence for an individual from 1000G where the sequence incorporates variants typed for this individual. Using tabix and …
Music Error
written 13.8 years ago by will.lockwood •

Hi, I am trying to run bmr calc-covg in Genome MuSiC and keep receiving the following error: Can't call method "print" on an undefined …