bcftools concatenation error
I have 22 vcf files from each chromosomes. I am try ing to concatenate the vcf files
bcftools concat -f files.txt -Oz > merged.vcf
I keep getting this error:
chromosome 9 is not contiguous, consider running with -a.
How can I resolve this issue?
• 3,400 views
•
link
1 answer
Well....why can't you run it with -a?
• 0 views
•
link
Log in to answer this question.