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Cytoscape Tetramer Error Without Hints

Hi there, currently I am trying to use Cytoscape Tetramer for some regulator prediction projects, but got an error without any hints. Here is the error I got:

enter image description here

Seems that my input dataset is correct after double checking - There is no error message shown after uploading the time series expression data. But this error panel is shown when I prepared everything done and hit the "Create the network" button. This is completely new for me, and any help will be much appreciated.

regards, W

PS: Here shows the expression dataset I used (displayed by R, and the final format is .txt).

enter image description here

regulator prediction cytoscape grn tetramer
• 1,355 views • link
updated by Scooter Scooter • written by 630720255 • 630720255

Greetings,

Unfortunately, I'm not familiar with tetramer, but one suggestion would be to run Cytoscape on the command line (cytoscape.sh for Linux or Mac, cytoscape.bat for Windows) and post the stack trace. That will give us a pretty clear idea of where the problem might lie. It might not lead to a solution, but at least we can direct your question for clearly. Second, have you tried the sample data set in their tutorial? If that works, and yours doesn't, that will also help debug the problem.

-- scooter

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written by scooter scooter

have you been able to download the networks? The links are all dead enter image description here

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written by e.r.zakiev • e.r.zakiev

Tetramer hasn't been updated since 2017, which is before everyone started mandating https rather than http. I suspect that's why the links are now all dead.

-- scooter

• 0 views • link
written by Scooter Scooter

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