More posts like this
-
Illumina sequencing data trimming help
written by Elena 0Hi! I never posted here before but I wanted somebody's opinion. I did paired end Illumina sequencing on mosquito DNA and ran fastqc to check …
-
heatmap does not look like good
written by sehriban.buyukkilic 1Hi, I tried make heatmap in R for data has 14637 obs. But my map is not look okay. ```r pheatmap(df1, display_numbers = F, color …
-
Cannot access NCBI - Error 500
written by Paxton 0I am new and just started working on my first bioinformatics project. But idk I cant access any website on NCBI. It just shows Error …
-
how to costum the color palette for ggplot2
written by Qianjiang(QJ) Hu 1Hi, I use the following code to get the heatmap (figureA): **My code:** ![enter image description here][1] **Figure A** ![enter image description here][2] However, I …
-
HISAT2 paired end multiple files loop error
written by SH 0Hi, I got stuck with running hisat2 with a loop. my input files are here, ![enter image description here][1] here is my loop code, for …
-
Error in DiffBind
written by Scabbards 0Hi, I have error said **Error in if (sum(res$peaks[[1]]$Score < 0) > 0) { : missing value where TRUE/FALSE needed In addition: There were 17 …
-
Why my `Percent duplicates` in a shallow sequencing is too high?
written by 631079064 0I made a 10x snATAC-seq library and do a shallow sequencing of 5G. Typically, the `Percent duplicates` is less than 20%. However, my library had …
-
DiffBind dba.count error Error in if (sum(tokeep) < length(tokeep))
written by wangxiong 0When I used dba.cout with DiffBind, the following error occurred. > dbObj <- dba(sampleSheet="SampleSheet.csv") FAD1 AD 1 narrow FAD2 AD 2 narrow WT1 WT 1 …
-
Can not plot degree distribution in Cytoscape Network Analyzer on logscale
written by bhodai 0I am using Cytoscape 3.9.0. When I tried - Tools > Analyze Network, the following window poped-up ![enter image description here][1] When I clicked on …
-
[Errno 2] No such file or directory: '0-rawreads' when I run Falcon unzip with hifi data
written by Feng 0Hi all, I am running the falcon-unzip in a server, but got this error ![enter image description here][1] Here ia my fc_unzip.cfg file ![enter image …