Hello All,

I would like to install Seurat at rpy2 environment .

 import rpy2
 import rpy2.robjects as ro
 import anndata2ri

 ro.r('BiocManager::install("MAST")')
 ro.r('BiocManager::install("rgeos")')
 ro.r('BiocManager::install("Seurat")')

While installing Seurat it is asking geos-config missing

i have tried to load geos module before running the R

 module load geos/3.6.2

but i am not able to locate geos-config using " which geos-config"

Can anyone help me how to install Seurat in rpy2 as robjects.?

i have also tried with importr and utils none of them working