This is a test version of Biostars. For the public version, visit https://www.biostars.org.
akilabioinfo
akilabioinfo
Reputation:
10
Joined:
9.6 years ago
Last seen:
3.0 years ago
Location:
India
Latest posts by user
0 votes
2 replies
1.1K views
Differential gene expression pattern changes while using nuclear/unspliced counts
model kallisto mixed deg
updated by dsull dsull • written by akilabioinfo • akilabioinfo
0 votes
0 replies
632 views
How to use python packages for mixed model while differential testing?
dge mixed model lme4 mast
written by akilabioinfo • akilabioinfo
0 votes
0 replies
998 views
Problem in Installing Seurat in rpy2.robjects
seurat.geos rpy2
written by akilabioinfo • akilabioinfo
0 votes
0 replies
0 views
Comment: Comment: "NaN " values are copied instead of float values (pd dataframe to adata.obs)
updated by Ram Ram • written by akilabioinfo • akilabioinfo
0 votes
1 reply
0 views
Comment: Comment: "NaN " values are copied instead of float values (pd dataframe to adata.obs)
written by akilabioinfo • akilabioinfo
0 votes
5 replies
2.1K views
"NaN " values are copied instead of float values (pd dataframe to adata.obs)
pandas anndata
updated by Ram Ram • written by akilabioinfo • akilabioinfo
0 votes
0 replies
642 views
Empty droplets- Knee/inflection cutoff python module
qc kneeplot dropseq
written by akilabioinfo • akilabioinfo
0 votes
1 reply
0 views
Comment: Comment: Unspliced matrix from RNA velocity is it similar to pre-mRNA alignment?
written by akilabioinfo • akilabioinfo
0 votes
3 replies
1.9K views
Unspliced matrix from RNA velocity is it similar to pre-mRNA alignment?
velocity deg count rna
updated by dsull dsull • written by akilabioinfo • akilabioinfo
0 votes
1 reply
0 views
Comment: Comment: RNA velocity similar mtx for spliced and unspliced region (dropseq)
written by akilabioinfo • akilabioinfo
0 votes
1 reply
0 views
Comment: Comment: RNA velocity similar mtx for spliced and unspliced region (dropseq)
written by akilabioinfo • akilabioinfo
0 votes
5 replies
2.6K views
RNA velocity similar mtx for spliced and unspliced region (dropseq)
dropseq rnavelocity kallisto-bustools
updated by Ram Ram • written by akilabioinfo • akilabioinfo
0 votes
1 reply
1.5K views
Differential transcript usage StageR error message
drimseq bioconductor dtu stage-r r
updated by zx8754 zx8754 • written by akilabioinfo • akilabioinfo
0 votes
2 replies
2.8K views
How to perform eQTL study if i have small sample size?
eqtl gwas snp rna-seq
updated by maxime.policarpo maxime.policarpo • written by akilabioinfo • akilabioinfo
0 votes
1 reply
1 view
Comment: C: What is the advantage of variant calling using RNA-seq technique?
written by akilabioinfo • akilabioinfo
0 votes
0 replies
1 view
Comment: C: What is the advantage of variant calling using RNA-seq technique?
written by akilabioinfo • akilabioinfo
1 vote
12 replies
11K views
What is the advantage of variant calling using RNA-seq technique?
rna-seq galaxy variant calling
updated by jpuntomarcos • jpuntomarcos • written by akilabioinfo • akilabioinfo
0 votes
1 reply
1 view
Comment: C: Differential gene expression results are different while using hg19 and hg38 gen
written by akilabioinfo • akilabioinfo
0 votes
7 replies
2.9K views
Differential gene expression results are different while using hg19 and hg38 genomic assembly
rna-seq galaxy cufflink featurecounts stringtie
updated by Devon Ryan Devon Ryan • written by akilabioinfo • akilabioinfo
0 votes
0 replies
0 views
Comment: C: How to identify the SiRNA abundance from transcriptome data
written by akilabioinfo • akilabioinfo
Latest awards to user
TODO: Awards