Is it human protein cell atlas or human primary cell atlas? couldn't find the one that was protein atlas...
Where can I find publicly available PBMC bulk cell seq and scRNA seq data that are from control samples (or samples from healthy patients subjects).
Thanks in advance!
1 answer
For processed bulk RNA-seq data in Robjects, see celldex, especially the Human Protein Cell Atlas data set.
For count matrices of single-cell RNA-seq data, see Bioconductor's singlecellRNAseq package.
For obtaining raw reads of either of these data sets, follow GenoMax' advice via sra-explorer or directly in GEO.
Yes, excuse my typo. But you may also read the descriptions of the data sets yourself and decide which ones are a good fit.
10x has single-cell PBMC datasets you can download. You will need to provide an email address.
I also need bulk cell data from the same study/sample but most publications do either just bulk or scRNA, never the both
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Are you asking for bulk (i.e normal) or scRNA seq data? You are using tags for both. In any case searching https://sra-explorer.info/ is one option.
Im looking for both bulk RNA-seq data and scRNA seq data of PBMC