Hello All,
I need to do a correlation study with publicly available ALL RNA-seq data samples with in house RNA-seq sample (a single patient sample from different time series), to make the data statistics stronger. I would like to have a bigger patient cohort for my analysis so I was looking for publicly available RNA-seq samples from ALL(Acute lympoblastic Leukemia) patients.
Could any one suggest me with the database or website to find it .?In TGCA database has only AML samples and that too exome-seq
Thank you
4 answers
Have you tried Expression Atlas?
I like DNANexus' SRA search tool since it has easier filtering by species and assay and has good metadata text search.
You can restrict it to studies in human with "RNA-seq" or "transcriptome analysis." Of those, we get:
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Clinical cohort for cancer sequenced using scRNA-Seq
written by Nitin Narwade
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RNA-seq dataset of experiment and control group of TARGET-ALL project in TCGA portal
written by song83244829 •
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Job: Open post-doc position in cancer genomics at WashU in St. Louis
written by dhspence •
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Job: Bioinformatics Research Analyst, Washington University @ St. Louis, Missouri, USA
written by jwelch •
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How to calculate the sensitivity and specificity of set of expression dataset used in a validation…
written by a.james
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will different proportion of control/patient samples affect gene's Pearson correlation?
written by hellocita •
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How to compare time series data of gene expression studies?
written by mathavanbioinfo
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Tumor Progress Study
written by haiying.kong
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Can a bioinformatics analysis based on 2 patient samples be published
written by ChIP
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Manipulating Normal Individual Data For Cnv Analysis
written by Vikas Bansal
Thank you so much for all suggestions, I will look into those.