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Burkholderia assembly

Hello there, Recently I am working with Burkholderia spp. As it has 2 chromosomes, is it possible to get individual fasta files for each chromosome? If possible, which assembler should I use? I have used Spades for other assemblies which have single chromosome. The sequencing platform was illumina miseq.

assembly burkholderia
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updated by andres.firrincieli andres.firrincieli • written by saifulislam99121 • saifulislam99121

is it possible to get individual fasta files for each chromosome?

With only Illumina sequencing data is very unlikely; no matter which assembler you use

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written by andres.firrincieli andres.firrincieli

We have a plan do Minion sequencing by next week. Will it be possible then?

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written by saifulislam99121 • saifulislam99121

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