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Help with VCF-Validator

vcf-validator gives out an error.

Broken VCF header, no column names?
 at /usr/share/perl5/Vcf.pm line 172, <__ANONIO__> line 2.
        Vcf::throw(Vcf4_2=HASH(0x7fffc55e6c70), "Broken VCF header, no column names?") called at /usr/share/perl5/Vcf.pm line 867
        VcfReader::_read_column_names(Vcf4_2=HASH(0x7fffc55e6c70)) called at /usr/share/perl5/Vcf.pm line 602
        VcfReader::parse_header(Vcf4_2=HASH(0x7fffc55e6c70)) called at /usr/share/perl5/Vcf.pm line 2557
        VcfReader::run_validation(Vcf4_2=HASH(0x7fffc55e6c70)) called at /usr/bin/vcf-validator line 60
        main::do_validation(HASH(0x7fffc55b2470)) called at /usr/bin/vcf-validator line 14

I have tried to bgzip and tabix the files as per previous posts, but nothing helps. Please Help!

sequencing snp

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