Single-cell analysis
Dear all, I hope all of you be fine and healthy.
A single cell dataset has 3 tumor samples with 10x genomics files. What is the best method to analyze these samples? Analyze each sample individually and combine the results or merge all the samples and then analyze the merged samples.
I would be grateful if you could guide me to resolve it.
• 823 views
•
link
updated
by
ATpoint
•
written
by
Morteza Hadizadeh •
•
written
by
Morteza Hadizadeh •
1 answer
quality time to be spent here https://bioconductor.org/books/release/OSCA/
Log in to answer this question.
More posts like this
-
How do I combine or integrate my VDJ data for TCR and BCR with seurat object?
written by Jaber •
-
Can I compare Gene Expression in T Cells from PBMCs vs. Tumor Tissue (for match samples)?
written by Saeedeh Salehi •
-
Which method should I use to merge scRNA-seq data, Cellranger aggr or Seurat?
written by Apprentice
-
Meta-analysis of gene expression data versus individual dataset analysis
written by Morteza Hadizadeh •
-
batch effect removal by ComBat_seq function
written by Morteza Hadizadeh •
-
A chord plot for miRNA IDs by GOplot package
written by Morteza Hadizadeh •
-
Cross-platform of microarray or analysis separately
written by Morteza Hadizadeh •
-
Cross-platform of microarray
written by Morteza Hadizadeh •
-
News: 2nd Workshop on Single-Cell Sequencing
written by dnsv.ev •
-
single cell data analysis
written by vibes1002003 •
