Thank you so much for your guidance.
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Morteza Hadizadeh •
Pearson's Correlation Coefficient and expression matrix
Hi every one,
I have an expression matrix, the rows contain 550 mutual DEGs and columns contain 73 samples (550*73), samples are divided into 2 groups (control and case), 30 sample for control and 43 samples for the case. I want to calculate Pearson's Correlation Coefficient for each group to construct a co-expression network.
I would be grateful if you could guide me to do it.
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biobiu
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Morteza Hadizadeh •
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Morteza Hadizadeh •
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What about MDS? I think that to your purpose it would be more illustrative/explanative..
Mutual differential expression genes contain up and down-regulated genes.