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chromosome mm10 size with genomecoveragebed

Hi, I would to convert my bed file in bedgraph using bedtools. I use this command:

genomeCoverageBed -bg -i file.bed -g mm10_canon_chr.sizes > file.bg

but this message appeared:

Error: The requested genome file (mm10_canon_chr.sizes) could not be opened. Exiting!

How can I solve the problem?

Thank you

bedtools genomecoveragebed bedgraph

What is the output of head mm10_canon_chr.sizes?

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