Invalid multibyte string R
I am trying to convert a BED file into BAM, and although it created, the following error appeared. How can be solved?
I tried to change the bed dataframe encoding, but without result.
Below are the command and the error.
> bedr(engine = "bedtools",
method = "bedtobam -i",
params = "-g ./data/U00096.2.fasta.fai",
input = list(bed),
outputFile = newbam,
check.chr = FALSE,
check.sort = FALSE,
check.zero.based = FALSE,
check.valid = FALSE,
check.merge = FALSE)
* Processing input (1): CONVERT TO BED * Checking input type... PASS
Input is to bed format
bedtools bedtobam -i /tmp/RtmpfljR3L/_111c6558b8lacc.bed -g ./data/U00096.2.fasta.fai
Error in bedr(engine = "bedtools", method = "bedtobam -t", params = "-g ./data/U00096.2.fasta.fai", :
invalid multibyte string at '<c9><cf><cf>)<8e>0<4a>M'.
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