geo database for integrated miRNA-mRNA sequencing of neural cell

I was wondering if anyone knew of GEO datasets comprising both miRNA and mRNA sequencing of human neural cells or post-mortem brains.

mir-seq mrna-seq

• 640 views • link

written 4.4 years ago by RNAseqer

0 answers

No answers yet.

More posts like this

scVI vs Harmony, which is better for cell type based clustering in brain tissue?
written 10 months ago by biotrekker •

Hello, I have a post-mortem dataset with 50+ donors. I do not have a brain region specific reference so I cannot use scANVI. I was …
GEO Matrix File Help
written 5.1 years ago by Melvin •

Hello, I am trying to convert the digital expression matrix of a single cell RNA-seq dataset on GEO to a counts matrix (e.g. rows = …
RNA-seq of human cells and bacteria
written 5.2 years ago by bart •

Hey, I want to study bacterial RNA which may be present inside human cells. The transcriptome of the human cells have been studied using RNA-sequencing …
Single-cell RNAseq for glia
written 5.4 years ago by genetics78 •

Hi, I was wondering if anyone knew where I could find single-cell RNAseq data for oligodendrocytes (preferably human but could also be mouse). Thank you …
best practices/ pipeline for miRNA sequencing QC
written 5.7 years ago by RNAseqer

I'm currently searching the literature for a recent 'best practices' review of miRNA sequencing data QC. I was wondering if there was a pipeline which …
A good place to get immune cell deconvolution reference datasets?
written 6.5 years ago by RNAseqer

Hello all, I'm just familiarizing myself with immune cell deconvolution of differential expression data (microarray specifically) and I see that many programs require a purified …
whats is the best normalization technique for miRNA microarray data?
written 7.2 years ago by RNAseqer

Hello all, So I have some Affy microarray data for miRNAs and I'm wondering what normalization techniques to apply to it. As I understand it …
RNA-seq HEK293T recent datasets
written 9.1 years ago by Sergio Martínez Cuesta

Dear all, I am currently exploring ArrayExpress/GEO for relevant datasets, but I was wondering if anyone is aware/have used any recent RNA-seq datasets involving the …
Collection of 5' mRNA ends from human transcriptome
written 11.5 years ago by surka •

Hello! I was wondering if anyone knew of a downloadable dataset consisting of just the 5' UTR of all (most?) human mRNA. I thought FANTOM5 …
How to deal with sequencing reads that can both align to miRNA precursors and mRNA database?
written 12.3 years ago by dolphing •

<p>Hi,</p> <p>I have some miRNA sequencing datasets from human, the 3' adapters were trimmed and reads length less than 18 bp were discarded. When I …