More posts like this
-
Determining SNP overlap of two different arrays
written by vannajhay •Hello, I was wondering how one would determine if two SNP arrays had that overlapped? And if so, how many overlap between the two platforms? …
-
alternatives to replication for GWAS
written by putty •Hello Dear community, I am really in a fix. I did GWAS using array data on discovery cohort and found some significant hits, but my …
-
inflated QQ-PLOT
written by putty •Dear All, I did linear regression in plink/1.90 for quantitative trait (N=450) using SNP array data. Plotted qq plot using QQ-man package in R. I …
-
Mixed Illumina Methylation data from EPIC and 450k
written by Pac314 •I am analyzing some mixed methylation array data from EPIC and 450k arrays using Minfi and would like to know whether the two arrays can …
-
Axiom Array and problems to read .cel files
written by ijvechetti •Hello all, after reading through the community, I could not find an answer to my problem. I have received an SNP array, from axiom and …
-
Help with Masurca and scripts to use and how to go about
written by NPB •Hi All, I am trying to work on genome assembly and plan to use minION sequencing for generating long reads for a fungus. I am …
-
How to analyze Geniom Biochips Microarray data
written by nazaninhoseinkhanDear all, I want to analyze a microarray data set which has been performed by Geniom Biochip arrays. I am not familiar with this platform. …
-
Identification of Long Non coding RNa in De novo
written by AyehSadr •Dear All I am working on Identification of long non-coding RNAs in scorpion, in this case the genome reference is not available, I have to …
-
Histone modifications data on embryonic stem cells to differentiated stages
written by Chirag NepalDear all, I am looking for histone modifications (H3K4me1/me3, H3K27ac/me3) data during differentiation of embryonic stem cells (ESC) to some differentiated cells in human. Such …
-
Affy Mouse Transcriptome Array analysis with Bioconductor
written by Juan CorderoDear community, I am a newbie in Affy analysis with Bioconcuctor and, while 3'UTR arrays analysis results quite straightforward (normalisation, DE, enrichment analysis...), I am …