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Axiom Array and problems to read .cel files

Hello all, after reading through the community, I could not find an answer to my problem. I have received an SNP array, from axiom and seems like that the files are the new Calvin CEL files. I cannot open them using affy, oligo packages. I read somewhere to try to use readCcg from affxparser package, and it does seem to work. However, I can not do all the CEL files at the same time. DO you guys happen to have any workaround that would allow me to read all the CEL files at once and proceed to SNP analysis?

axiom oligo affy aroma.affymetrix
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updated by Kevin Blighe Kevin Blighe • written by ijvechetti • ijvechetti

1 answer

Hi, I am less familiar with the Axiom arrays. Can you not try Axiom Analysis Suite

Kevin

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written by Kevin Blighe Kevin Blighe

Thanks Kevin. I think that is going to be my strategy. I appreciate it.

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written by ijvechetti • ijvechetti

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