Hello everybody, I am trying to install latest version of bcftools in my ubuntu system. But when I run this command sudo apt-get install bcftools …

Dear all, I want a combined script for pooled-Heterozygosity (Hp) and Runs of homozygosity (ROH) statistics, but unfortunately I am unable to find it. Kindly …

Dear all, I have pileup file of pooled-seq samples generated using samtools mpileup feature. I want to convert it to map file to compute various …

Dear all, I am trying to make genetic map file from vcf using polymutt2 tool. While compiling it by typing make, following error occurs: make[1]: …

Hi, I am using detectRUNS package on R software to visualize my roh data generated by bcftools roh option. I used these commands on R …

Hi, I am doing roh analysis using bcftools ``` bcftools roh --AF-file input_freqs.tab.gz input.vcf > output_roh.txt Number of target samples: 1 Number of --estimate-AF samples: …

Hii, I am using Selscan for XPEHH, iHS analysis. For these tests, a genetic recombination map tsv file with four columns: (Chromosome, Position(bp), Rate(cM/Mb), Map(cM)) …

Hi all, I was trying to conduct ROH analysis with bcftools version 1.9. As I don't have any information about allele frequency from my target …

Hii, I have a synchronized file (output from popoolation2 tool using its feature mpileup2sync.jar). And i had merged 21 synchronized files of various breeds for …

Hi, I'm using whole genome sequencing data to detect the ROH. I want to know which tool should I use, Plink or bcftools. Thanks!