Hi. I have a mRNASeq dataset and a corresponding RiboSeq dataset and I was wondering if I could analyze both (separately of course) using StringTie. I know that StringTie was designed for de novo transcriptome assembly from mRNASeq data, but I didn't know if it would be suitable for RiboSeq data as well. We'd want to use StringTie to generate transcripts de novo and then map to existing genome's gene/transcript gffs for both datasets. Does anyone have any experience doing this?

Thanks, Julie