What alignment tools do you use?
Hi all,
I have 4 protein fasta, and I would like to find common protein motif in these fasta. Could you please tell me a useful alignment tools?
I tried to use Multiple Sequence Alignment, but outputed results was difficult to see.
Thank you
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Have a look at Jalview http://www.jalview.org/getdown/release/
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MEGA(LINK) is a local desktop based option.