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What alignment tools do you use?

Hi all,

I have 4 protein fasta, and I would like to find common protein motif in these fasta. Could you please tell me a useful alignment tools?

I tried to use Multiple Sequence Alignment, but outputed results was difficult to see.

Thank you

alignment multipe-alignment linux

MEGA (LINK) is a local desktop based option.

1 answer

Have a look at Jalview http://www.jalview.org/getdown/release/

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