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generate motif sequence logo

i want to generate the sequence logo of my enzyme .i find out motif among all the enzyme. which is more appropriate to generate sequence alignment of all protein sequence or sequence alignment of motif all sequence. Please help me

alignment sequence gene
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updated by Paul A. Gagniuc • Paul A. Gagniuc • written by himani6606 • himani6606

2 answers

Online sequence logo tool: WebLogo 3

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written by shenwei356 shenwei356

thanks for your reply but my query is should i generate the seq logo of all my 23 seq of multiple alignment. or should i generate the logo of all the motif detected by prosite scan

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written by himani6606 • himani6606

I think a single uniform seq log is more suitable for description of a enzyme recognization site

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written by shenwei356 shenwei356

Offline Sequence Logo tool that has no dependencies: Sequence Logo

More here: Make a Sequence Logo in your browser by using native Javascript

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written by Paul A. Gagniuc • Paul A. Gagniuc

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