This is a test version of Biostars. For the public version, visit https://www.biostars.org.
BINGO Cytoscape

How do you interpret GO enrichment results from BINGO plugin in Cytoscape? There are many repetitive GO terms and simple terms e.g. Biological Process. Is there a way to reduce these repetitive terms? I am new to BINGO and GO analysis so any guidance will be really helpful. Thank you!

cytoscape bingo snp enrichment go
• 1,955 views • link
written by phoenix.sum13 • phoenix.sum13

not sure for the BiNGO approach but perhaps you can go with GOslim annotations? Those should be less 'redundant'

• 0 views • link
written by lieven.sterck lieven.sterck

1 answer

Greetings,

I would recommend using stringApp rather than BiNGO if you want to remove redundant terms. stringApp has a feature that allows you to filter the ontologies used and to remove the redundant terms (using Jaccard similarity).

-- scooter

• 0 views • link
written by scooter scooter

Thank you so much. I tried String and ClueGO and it helped me a lot.

• 0 views • link
written by phoenix.sum13 • phoenix.sum13

Log in to answer this question.

More posts like this