Gene Ontology for the species Malus domestica
Hi all, I mapped my reads using STAR and have feature counts. In R, I am using edgeR, limma, and voom for differential expression analysis. I did TREAT and glmMD plot. I have the differential expression list based on Gene-ID. For gene set testing, I tried to use goana but I coudn't find my species Malus domestica. Can anyone help me on how to proceed with Gene Ontology?
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https://www.gsea-msigdb.org/gsea/index.jsp Get your full gene list and a normalised reads count matrix with all the replicates of interest, then run GSEA.
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Marco Pannone •
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