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James Ashmore
James Ashmore
Reputation:
3,470
Joined:
11.9 years ago
Last seen:
2.7 years ago
Location:
UK/Edinburgh/MRC Centre for Regenerative Medicine
Twitter:
jma1991

I am a PhD student in Simon Tomlinson's research group at the MRC Centre for Regenerative Medicine. My interests lie in the biology of reprogramming, and developing methods to analyse the reprogramming process.

Latest posts by user
0 votes
1 reply
1.1K views
Batch-correction of partially confounded RNA-seq data
rna-seq
updated by Carlo Yague Carlo Yague • written by James Ashmore James Ashmore
5 votes
1 reply
0 views
Answer: C: Batch correction in scRNA-seq data via fastMNN | pro/contra
written by James Ashmore James Ashmore
0 votes
0 replies
1 view
Comment: C: Software to extract run information from FASTQ headers?
written by James Ashmore James Ashmore
1 vote
0 replies
1 view
Comment: C: Software to extract run information from FASTQ headers?
written by James Ashmore James Ashmore
0 votes
0 replies
1 view
Comment: C: Software to extract run information from FASTQ headers?
written by James Ashmore James Ashmore
2 votes
8 replies
6.6K views
Software to extract run information from FASTQ headers?
fastq
updated by Pierre Lindenbaum Pierre Lindenbaum • written by James Ashmore James Ashmore
0 votes
1 reply
1 view
Comment: C: So frustrated compiling necessary packages in a linux system
written by James Ashmore James Ashmore
0 votes
0 replies
1 view
Answer: A: Finding differences in motif enrichment between ATAC peak samples?
written by James Ashmore James Ashmore
0 votes
0 replies
1 view
Comment: C: Experimental design for RNA-seq time-course with the same start and end points b
written by James Ashmore James Ashmore
1 vote
2 replies
2.7K views
Experimental design for RNA-seq time-course with the same start and end points but different treatments
rna-seq
updated by Biostar Biostar • written by James Ashmore James Ashmore
2 votes
1 reply
0 views
Comment: C: using bash variable in picard MarkDuplicates command
written by James Ashmore James Ashmore
1 vote
0 replies
1 view
Comment: C: Analysis of gene expression data
written by James Ashmore James Ashmore
2 votes
0 replies
1 view
Answer: A: Processing ATAC-seq data after peak calling
written by James Ashmore James Ashmore
0 votes
1 reply
1 view
Comment: C: A question about Homer ChIP-seq analysis
written by James Ashmore James Ashmore
0 votes
1 reply
1 view
Comment: C: A question about Homer ChIP-seq analysis
written by James Ashmore James Ashmore
0 votes
1 reply
1 view
Comment: C: Annotating/Finding "NNNNNN" scaffold gaps in genome assembly
written by James Ashmore James Ashmore
2 votes
1 reply
1 view
Comment: C: ATAC-seq DE analysis
written by James Ashmore James Ashmore
0 votes
1 reply
1 view
Comment: C: Creating pseudo-replicates from a paired-end BAM file
written by James Ashmore James Ashmore
0 votes
1 reply
1 view
Comment: C: Creating pseudo-replicates from a paired-end BAM file
written by James Ashmore James Ashmore
0 votes
1 reply
1 view
Comment: C: output TMM normalized counts with edgeR
written by James Ashmore James Ashmore
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