How to identify corresponding chromosomes and coordinates of a species for query genes from a another species
I have a list of genes from species A and reference genome and gff3 of species B. I want to know homologous genes of species A genes in species B. I am specifically interested in knowing the chromosomes and coordinates.
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Glubbdrubb •
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majeedaasim •
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majeedaasim •
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I would blast the genes from A against the B genome, then use the coordinates to identify genes in the GFF file. I have a python script that does this using Biopython and gffutils.