I have a scaffold-level haploid genome assembly generated with PacBio hifi data for species A. I have a chromosome-level reference genome of a haploid close relative (species B), which has been phased into chromosomes and subgenomes. We presume they both have undergone the same genome duplication event.

I was wondering if could simply map my species A genome contigs onto the chromosomes of species B as a method of phasing? Or recommend specific software to resolve this.