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shreyasibiswas88
shreyasibiswas88
Reputation:
30
Joined:
10.9 years ago
Last seen:
8.1 years ago
Location:
United States
Latest posts by user
0 votes
0 replies
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Comment: C: Samtools mpileup returns empty vcf file
written by shreyasibiswas88 • shreyasibiswas88
0 votes
1 reply
1.5K views
2/50 inidividuals show missing data at almost all positions in final vcf generated using HaplotypeCaller
gatk vcf missingdata haplotypecaller
updated by Biostar Biostar • written by shreyasibiswas88 • shreyasibiswas88
0 votes
1 reply
1 view
Comment: C: Samtools mpileup returns empty vcf file
written by shreyasibiswas88 • shreyasibiswas88
0 votes
4 replies
2.6K views
Samtools mpileup returns empty vcf file
samtools mpileup
updated by Ram Ram • written by shreyasibiswas88 • shreyasibiswas88
0 votes
0 replies
1.5K views
bioperl fasta indexing problem with non model genome sequence
bioperl mrna fasta index reference
written by shreyasibiswas88 • shreyasibiswas88
0 votes
0 replies
0 views
Comment: C: Extract Cds Fastas From A Gff Annotation + Reference Sequence
written by shreyasibiswas88 • shreyasibiswas88
0 votes
2 replies
2.5K views
Make fasta sequence of specific lengths from Vcf file of specific lengths
gatk fastareference vcf snp phylogenetic tree
updated by WouterDeCoster WouterDeCoster • written by shreyasibiswas88 • shreyasibiswas88
0 votes
0 replies
2.5K views
Should I average dN/dS over all CDS for a gene or consider only the longest transcript?
dnds paml longest transcript average dn/ds
written by shreyasibiswas88 • shreyasibiswas88
0 votes
3 replies
6.0K views
yn00 in PAML returns error: Error in sequence data file: E at 3 seq 1.
paml pal2nal phylip input file
updated by Elaine Wang • Elaine Wang • written by shreyasibiswas88 • shreyasibiswas88
0 votes
1 reply
0 views
Comment: C: Determining the correct reading frames for transcripts for dn/ds calculation
written by shreyasibiswas88 • shreyasibiswas88
0 votes
3 replies
2.7K views
Determining the correct reading frames for transcripts for dn/ds calculation
dn/ds ka/ks orf comparative genomics translation
written by shreyasibiswas88 • shreyasibiswas88
0 votes
0 replies
0 views
Comment: C: Matching fasta headers in a file and removing the entries that do not have a cor
written by shreyasibiswas88 • shreyasibiswas88
0 votes
1 reply
0 views
Comment: C: Matching fasta headers in a file and removing the entries that do not have a cor
written by shreyasibiswas88 • shreyasibiswas88
0 votes
1 reply
0 views
Comment: C: Matching fasta headers in a file and removing the entries that do not have a cor
written by shreyasibiswas88 • shreyasibiswas88
0 votes
0 replies
0 views
Comment: C: Matching fasta headers in a file and removing the entries that do not have a cor
written by shreyasibiswas88 • shreyasibiswas88
0 votes
7 replies
3.5K views
Matching fasta headers in a file and removing the entries that do not have a corresponding match
fasta perl awk sed text processing
updated by Pierre Lindenbaum Pierre Lindenbaum • written by shreyasibiswas88 • shreyasibiswas88
1 vote
0 replies
1.3K views
Difference in number of variants called when you switch the reference
genome snp next-gen gatk
written by shreyasibiswas88 • shreyasibiswas88
1 vote
7 replies
8.1K views
Error while trying to get consensus Fastq from BAM
samtools bcftools vcfutils
updated by Istvan Albert Istvan Albert • written by shreyasibiswas88 • shreyasibiswas88
0 votes
1 reply
1 view
Comment: C: Concatenating 1000s of pairs of fasta files
written by shreyasibiswas88 • shreyasibiswas88
0 votes
4 replies
2.8K views
Concatenating 1000s of pairs of fasta files
fasta unix
updated by Ram Ram • written by shreyasibiswas88 • shreyasibiswas88
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