More posts like this
-
Pandas issue: To write multiple csv in loop
written by Nai 5I have table.csv with plant varieties linked with SNP Markers(400). One marker is occuring in 20 varities. I would like to make a separate csv …
-
How to write a python program for the following?
written by arr234 4I have 50 csv files named with a unique id in a folder. In each of the csv files, there are names and their corresponding …
-
EQTL visualization
written by Nai 5I have generated file from MATRIXEQTL . I would like to visualize haploblocks, plots for MATRIXEQTL. I am having SNP.txt, Gene expression.txt. How can I …
-
eQTL Analysis
written by Nai 5I am new in eQTL. I am trying to work in Matrix EQTL in R. I have gene expression txt file and SNP.txt file. In …
-
EQTL analysis
written by Nai 5I am working on autoimmune disease where I have variant calling file and Differentially expressed genes list. Please guide me about eQTL and sQTL analysis …
-
WGCNA Module Trait Correlation
written by ninabhatia3 0I am trying to find the correlation between gene modules and the tissue where the gene was found in. I have 2 seperate CSV files. …
-
How to perform eQTL study if i have small sample size?
written by akilabioinfo 1Hi All, I would like to study the variant effect in gene expression (eQTL) Currently, I am having 4 RNA seq sample for the disease …
-
converting vcf to text file
written by AB 39Hi, I want to run Matrix EQTL on my data. I have the genotype information as an imputed VCF file and matrix EQTL requires a …
-
Mapping TCGA hybridisation reference to sample barcode
written by Alexander Skates 37I'm trying to carry out an eQTL analysis on some TCGA BRCA data I have. For the genotypes, I have a list of birdseed files, …
-
Is It Possible To Convert Csv To Arff?
written by samsara 63<p>I am currently working on biclustering methods. Most of them take gene expression data in tab delimited text file as input. I came across one …
Try looking at the software matrixeqtl or the bioconductor workflow here: https://www.bioconductor.org/packages/release/workflows/html/eQTL.html