This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Input source for the IPA tool

Dear all, Just wondering if people generally import full list of genes from an RNA-seq experiment or just the list of genes that reached significance as the input file for the Ingenuity Pathway Analysis tool? Thanks.

ipa rna-seq
• 1,450 views • link
written by Mozart Mozart

1 answer

Up to you as the user. You could bring in extended data and then filter inside IPA so you always have the full data available. Or you could simply start with a list of genes you have pre-selected elsewhere by criteria you had decided (fold-changes etc).

• 0 views • link
written by GenoMax GenoMax

Thanks a lot for confirming this. This is really reassuring!

• 0 views • link
written by Mozart Mozart

Log in to answer this question.

More posts like this