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Input source for the IPA tool

Dear all, Just wondering if people generally import full list of genes from an RNA-seq experiment or just the list of genes that reached significance as the input file for the Ingenuity Pathway Analysis tool? Thanks.

ipa rna-seq
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written by Mozart Mozart

1 answer

Up to you as the user. You could bring in extended data and then filter inside IPA so you always have the full data available. Or you could simply start with a list of genes you have pre-selected elsewhere by criteria you had decided (fold-changes etc).

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written by GenoMax GenoMax

Thanks a lot for confirming this. This is really reassuring!

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written by Mozart Mozart

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