Precomputed MSAs for human proteome
I am trying to generate MSAs for the human proteome using hhblits, but it is taking quite a long time. Does anyone know if there is a database that has precomputed MSAs available for download?
• 1,460 views
•
link
written
by
david.f.stein •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Looking for database with per residue conservation score for the whole human proteome
written by joko •
-
Using structure prediction approaches to predict interaction between two proteins
written by Daniel •
-
How can I bulk download transcript sequences?
written by david.f.stein •
-
Is there is a way to know that the sra data I'm interested in has a bad fastqc from sra database on…
written by FadyNabil •
-
LncRNA2Function unavailable - mirror?.
written by Berghopper •
-
GMAP download page
written by ATCG
-
Automate peptide lookup / matching in human plasma proteome (http://www.peptideatlas.org/hupo/hppp/…
written by cisek •
-
Blast entire proteomes
written by soileater •
-
Precomputed secondary structure prediction from sequence
written by by0
-
Database Of Gene Expression Experiments?
written by Wayne
MSA's against other genomes or within human genome?
If across genomes then take a look at NCBI's Homologene project. Ensembl has Compara.
I was looking for within the human genome, but I will take a look at these. Thanks!