I would love if anyone is willing to share code to add annotations beneath an msa plot using the ggmsa package in R, or alternatively could direct me to another package for creating msa plots with annotation ability.
Hi all, I got stuck at the step annotation file when following this tutorial: [https://cran.r-project.org/web/packages/scSorter/vignettes/scSorter.html][1] [1]: https://cran.r-project.org/web/packages/scSorter/vignettes/scSorter.html How do we get 2 columns: type and …
Hi everyone. Has anyone here used the [metaSeq package][1] to carry out a meta-analysis of raw counts data from RNA-seq runs from different studies? I …
Hi Here doing 3D plot https://cran.r-project.org/web/packages/barplot3d/vignettes/barplot3d.html But I don't know from where I can provide the input as every deconvolution tools to get 3 nucleotides …
Hi everyone! I had one favorite function, extremely useful for adjusting plots: graph2ppt. It allowed to change the text parts of the plot (labels, legend, …
Hi all, I'm trying to create some basic phylogenetic trees of human haplotype and looking for some feedback. I started using the R package "phangorn" …
Hello all, I want to calculate variant associations by CAST in [AssotesteR package][1]. But their default setting of fisher's test is two-sided. Does anyone know …
<p>I generally use Mr Bayes to make phylogenetic trees, then plot them with TreeView. I recently came across the <a href="http://cran.r-project.org/web/packages/ape/index.html">ape</a> package in R, and …