This is a test version of Biostars. For the public version, visit https://www.biostars.org.
adding annotations to ggmsa() in R

Hi all,

I would love if anyone is willing to share code to add annotations beneath an msa plot using the ggmsa package in R, or alternatively could direct me to another package for creating msa plots with annotation ability.

r ggplot cran msa ggmsa
• 809 views • link
written by noodle 65

0 answers

No answers yet.

Log in to answer this question.

More posts like this
  • highlight regions in a dot-plot?
    written by Buffo 246
    Do you know any tool to add annotations or highlight regions in a dot-plot? like the figure below using [Pafr][2]. Pafr is great but has …
  • How to create annotation file to use scSorter tool?
    written by Chris 36
    Hi all, I got stuck at the step annotation file when following this tutorial: [https://cran.r-project.org/web/packages/scSorter/vignettes/scSorter.html][1] [1]: https://cran.r-project.org/web/packages/scSorter/vignettes/scSorter.html How do we get 2 columns: type and …
  • How to get parameter for cluster in scCATCH tool
    written by Chris 36
    Hi all, I would like to annotate cell type from scRNA-seq data, so I follow the tutorial below: [https://cran.r-project.org/web/packages/scCATCH/vignettes/tutorial.html][1] obj <- createscCATCH(data = mouse_kidney_203, cluster …
  • hierBAPS for hierarchical clusters?
    written by Kumar 17
    Hi, I am trying to make a hierarchical cluster of a total 245 bacterial samples. I ran Snippy and got a core.aln file and a …
  • NAs in p-value result of GWAS association analysis
    written by JFeng 0
    Hi, I recently ran a GWAS association analysis using the R package 'statgenGWAS' (link:https://cran.r-project.org/web/packages/statgenGWAS/vignettes/GWAS.html). However, the p-value I got contains NA values and I was …
  • Making a legoplot of mutational signatures
    written by zizigolu 438
    Hi Here doing 3D plot https://cran.r-project.org/web/packages/barplot3d/vignettes/barplot3d.html But I don't know from where I can provide the input as every deconvolution tools to get 3 nucleotides …
  • "Export" package in R - do analogues exist?
    written by tanya_fiskur 8
    Hi everyone! I had one favorite function, extremely useful for adjusting plots: graph2ppt. It allowed to change the text parts of the plot (labels, legend, …
  • Tutorial: Heatmaps in R
    written by Jean-Karim Heriche 2.7K
    As heatmaps in R are a recurring theme, I thought I'd collect information here: **1. List of heatmap functions (and packages) in R:** - [heatmap][1] …
  • R Package snp.plotter accept microsatellites data for LD plot
    written by Shicheng Guo 963
    Hi All, What should I do if I want to plot the LD block for the mixture data including microsatellites and SNP? Did you know …
  • Fan Phylogram Using R
    written by Dave Bridges 138
    <p>I generally use Mr Bayes to make phylogenetic trees, then plot them with TreeView. I recently came across the <a href="http://cran.r-project.org/web/packages/ape/index.html">ape</a> package in R, and …