Survival analysis of data obtained from Broad GDAC Firehouse
Hi everyone, My query is how to get genewise clinical data from Broad GDAC Firehouse (https://gdac.broadinstitute.org/), it will be very helpful if anyone reply
gdac
• 1,066 views
•
link
updated
by
Ram
•
written
by
jyotsnap •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
regarding coexpression analysis (by pearson method) of genes shortlisted from expression profile of…
written by jyotsnap •Hello guys, Should I consider genes having "zero" normalized count given in expression data of a dataset while doing coexpression analysis with respect to a …
-
Expression analysis of data obtained from Broad GDAC Firehouse (https://gdac.broadinstitute.org/)
written by jyotsnap •Hello everyone, How to match clinical data patient barcode with `illuminahiseq_rnase_qv2_RSEM_gene_normalized` in broad firehouse gdac data because in clinical data patient barcode is given and …
-
Where can I get the GTex equivalent to rnaseqv2 Level3 RSEM_genes?
written by simplitia •Hi I want to compare TCGA lung cancer to normal lung in GTex. Currently I download expected_counts/raw counts from Gdac firehouse. My understanding is that …
-
is GDC portal have COLORECTAL (COADREAD) cancer ?
written by ChaimaaHello guys, Im very familiar with Broad institute portal, but now since i need to work with molecular profiles and clinical drug response data. now …
-
how to get Cinical drug response data from broad GDAC firehose?
written by Chaimaahi guys, Could anyone guide me on how to get clinical drug response data from TCGA ? I have access to the broad GDAC firehose …
-
GDAC firehose, multiple samples from RNASeq corresponds to the same clinical data
written by xuren2120 •Hi everyone, I have a question about the GDAC firehose data from this website: (https://gdac.broadinstitute.org). I downloaded the RNASeq data: *illuminahiseq_rnaseqv2-RSEM_genes* and clinical data: *Clinical_Pick_Tier1*, …
-
Best database for human mRNA expression information from different tissues?
written by k.kathirvel93Hi EveryOne, I am looking for database which contains human mRNA expression information from different tissues and cells. It will be helpful, if anyone suggesting …
-
Tutorial: use firehose_get to download TCGA data
written by jmzeng1314It's extremely easy to use `firehose_get` to download TCGA data About firehose This website is maintained by Broad Institute, the url is: http://firebrowse.org/, and all …
-
c.elegans W220 genes
written by elishevaHi everyone! Does anybody knows where can I find c.elegans WS220 genes? I tried to look at wormBase website. But when I'm trying the data …
-
Problem in defining groups from GSE in R
written by 786Hi everyone!! I'm working on GSE24422 and GSE67297 and facing difficulty in defining groups. I just couldn't understand that how to define groups for these …
What have you tried? What does "genewise clinical data" mean?
Hello jyotsnap ,
your account was suspended as your last two questions triggered the automated spam defense. I guess this was because of the URL in the question title. I reinstated you.
For your questions: Please use precise titles that describe the problem. No URLs in the title, and please do not put your username as tag. Try to put in effort, and describe things properly, with references to files you are talking about (e.g.a link in the question), so people can follow.