regarding coexpression analysis (by pearson method) of genes shortlisted from expression profile of a dataset obtained from GDAC Firehouse database
Hello guys,
Should I consider genes having "zero" normalized count given in expression data of a dataset while doing coexpression analysis with respect to a particular gene (whose expression value is positive). I have taken data from Broad gdac firehouse database..its mRnaseq (illuminahiseq_rnaseqv2-RSEM_genes_normalized (MD5)) data, obtained from database.
• 877 views
•
link
updated
by
Ram
•
written
by
jyotsnap •
•
written
by
jyotsnap •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Appropriate normalization of skewed data for "Translating multiomics single-cell data" with MOSCOT
written by npont •
-
Clusters in Differential Gene Expression Data
written by Scofield •
-
DESeq2 input from GDAC firehose
written by JB lee •
-
regarding gene expression data of GDAC Firehouse database
written by jyotsnap •
-
Batch correction proteomics dataset
written by Santosh •
-
Models of gene coexpression probability in single cell transcriptional space
written by zdebruine •
-
Variability explained by a core of genes
written by elb
-
RNA-SEQ data processing
written by meenakshikapase •
-
miRNAseq isoform-to-mature miRNA quantification
written by TJ •
-
R Simulate Snps And Expression Trait To A Given Network Structure
written by rich.a.schaefer •
