Hi Everyone, I've calculated pairwise Fst values for two populations using PLINK's --weir-fst-pop option, and I now have Fst values for each SNP. How can …

I'm getting different Fst values when I use `vcftools --weir-fst-pop` vs. the `varcomp.glob()` function from the R `hierfstats` package. I'm not sure why because they …

Hi, I tried to calculate Fst Values per SNPs using Popgenome(R package) and vcftools, but the value calculated by each methods were slightly different. Do …

Hi, I have to calculate the heterozygosity of some individuals from a vcf file with R. How can I do?

Dear all, I am working with ddRAD data, and I have allele and genotype frequencies of different SNPs in different populations. I have calculated Fst …

Hi, I calculated the Fst values (through Weir and Cockerham by a sliding-window approach in VCFtools) between two populations with different sample sizes (pop1=32 , …

Hi all, I've been working with genome-wide data for about 200 samples. I have 150.000 SNPs and I already calculated the Fst using Eigenstrat. I …

<p>Hi All,</p> <p>I want to make a genome wide Fst plot using the Lositan output along with P-Values calculated by lositan.</p> <p>Any inputs will be …

<p>Hello,</p> <p>I calculated Fst values for a few genes in my genome pairwise between a couple of isolates.</p> <p>It seems some of the genes have …

<p>Hello, </p> <p>I did calculate Fst values with 3 microsatellite makers for 29 populations using Arlequin 3.5.1.3 (Population pairwise Fst values: Compute F-statistics on haplotype …