How to convert ONT longread or illumina fastq to fasta file
Hi,
Is there a way to convert ONT longread/illumina fastq to fasta file
Thank you
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Mensur Dlakic
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K •
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K •
2 answers
Using reformat.sh from BBMap suite
reformat.sh -Xmx4g in=your.fastq out=your.fa qin=33
If you have paired-end Illumina data then use
reformat.sh -Xmx4g in1=R1.fq.gz in2=R2.fq.gz out1=R1.fa out2=R2.fa
IDBA assembler has a utility called fq2fa that does what you want.
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