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About qiime :convert fastq to fasta

I would ask you if there is a command in qiime for convert fastq file to fasta ??

genome sequence

Don't remember about qiime but you can use reformat.sh from BBMap suite to do the conversion easily.

reformat.sh in=file.fq.gz out=file.fa

You can also use SeqKit:

seqkit fq2fa file.fq.gz -o file.fa

or even awk:

zcat file.fq.gz | awk 'NR%4=="1" || NR%4=="2" {gsub("^@", ">", $0); print $0}' > file.fa

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