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rmapper-ls from the SHRiMP mapping package

If I have a fastq file for paired end sequencing, how do I convert Fastq to Fasta in order to be able to compare with SHRiMP? thank you

mapping shrimp
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written by 17318598206 • 17318598206

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seqtk seq -A in.fq > out.fa
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written by colindaven colindaven

if i have two fastq files, could i write it as : seqtk seq -A r1.fq r2.fq>out.fa?

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written by 17318598206 • 17318598206

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