Entering edit mode
2.9 years ago
lz1903
▴
10
Hi,
I just have a stupid question. I am using samtools mpileup to do base call. Here is my command,
samtools mpileup -f *.fa -l *.bed *1.bam *2.bam > *.txt
I got error CRC32 failure which I have no clue. I think it could due to the bed file. I may not have good format. But I went through samtools page and didn't find any explaination about file format.
My bed file looks like this:
chr4 59436 59436
chr3 382506 382506
run
samtools quickcheck *1.bam *2.bam && echo SUCCESS
to test your input.