samtools mpileup: error CRC32 failure
Hi,
I just have a stupid question. I am using samtools mpileup to do base call. Here is my command,
samtools mpileup -f *.fa -l *.bed *1.bam *2.bam > *.txt
I got error CRC32 failure which I have no clue. I think it could due to the bed file. I may not have good format. But I went through samtools page and didn't find any explaination about file format.
My bed file looks like this:
chr4 59436 59436
chr3 382506 382506
• 1,297 views
•
link
updated
by
Pierre Lindenbaum
•
written
by
lz1903 •
•
written
by
lz1903 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Samtools mpileup : error reading from input file
written by juliette •
-
samtools depth -r
written by lz1903 •
-
extract region from the bam file
written by 9521ljh •
-
How to calculate allele counts(Ref and alt) using a target bed file and aligned bam sample files
written by prernagoel04 •
-
Samtools consensus for WES files
written by sidjain •
-
Unsynchronized simultaneous reads on a single .bam file
written by kennethlim206 •
-
CONTRA baseline ZeroDivisionError: float division by zero
written by nina.naitatmane •
-
Querying positions (bed file) towards BAM files using samtools mpileup
written by a.james
-
Samtools Mpileup Does Not Contain Sample Name
written by komal.rathi
-
Reduce Bam File With Specific Loci In Bedfile
written by marcodpc •
run
samtools quickcheck *1.bam *2.bam && echo SUCCESSto test your input.