Hello everyone, Besides chr1->22, there are others name like chrM, KI270728.1,.... I want to create a bam file of these chromosome names (which is listed …
Hello guys I have a fasta file called hg19.fa.gz and it contains chromosomes like zcat hg19.fa.gz | grep ">" chr1 chr2 chr3 chrUn_gl000211 chrUn_gl000221 chrUn_gl000214 …
Hello all, I am trying to extract the mapped reads from a bam file for a specific region. samtools view -h in.bam "chr1:regionstart-regionend" > out.bam …