Color protein multiple sequence alignement per secondary structures · Biostar

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Color protein multiple sequence alignement per secondary structures

Dear all,

I have a multiple sequence alignement in one hand and their corresponding PDBs in the other hand.
Is their a tool to color the MSA background with the color of the secondary structures ?
I tried ESPRIPT which use the DSSP template, but for multimer it doesn't work and my PDBs can be only a fraction of the published structure.

Thank your for your support, Best, Thibualt.

multiple secondary sequence alignment structures color

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written 5.2 years ago by ttubiana

1 answer

I got bored with current tools, I've made my own small and basic script...

If you are interested to do that, you can use my script: https://github.com/tubiana/colorMSAwithSSE
Example: image example.

Best, Thibault.

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written 5.2 years ago by ttubiana

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