Difference between fCDS and CDS

I was checking for annotations in the MaGe - Genome Browser (https://mage.genoscope.cns.fr/microscope/mage/viewer.php?) and came across the term "fCDS". Can anyone please explain me the difference between fCDS and CDS? I already know what is CDS. Not sure about fCDS.

Thanks in advance.

fcds cds

• 2,053 views • link

written 5.2 years ago by Prashant •

1 answer

This means fragmented CDS. It is missing either the beginning (with start codon) or the End (with stop codon) or both of the CDS. I do not know if it is officially accepted in sequence ontology.

• 0 views • link

written 5.2 years ago by Juke34

Don't think it is accepted by sequence ontology.

It's called CDS_fragment it seems: http://www.sequenceontology.org/browser/current_release/term/SO:0001384

• 0 views • link

written 5.2 years ago by lieven.sterck

Thanks Juke34 and lieven.sterck. I will check the sequence ontology for more details.

• 0 views • link

written 5.2 years ago by Prashant •

More posts like this

DNA barcode pair distance.
written 6.2 years ago by vinaykusuma •

Hello, I came across a DNA barcode generation(https://github.com/feldman4/dna-barcodes) according to it the barcode pairs should have minimum distance between them. from what i understand about …
Pair Orientation in IGV
written 6.7 years ago by karthick.n •

I'm new to genomics platform. When I was analyzing the alignment data in IGV i came across the word "Pair Orientation"with values "F1R2", "F2R1". I …
Calculate Mean absolute allele frequency difference from MS output
written 8.5 years ago by Rubal

Does anyone know of a tool that can take MS coalescent simulator output format as input and calculate the mean absolute allele frequency different between …
Convert fastq.gz to fastq.bgz
written 8.6 years ago by caspase8mach •

Hello, Could someone please explain the difference between .gz and .bgz format - what are the advantages of one format over the other? I would …
difference between microsatellite markers
written 9.4 years ago by elvanbaskurt4848 •

Hi, Is there any difference between Illimuna-genomic sequence based microsatellite (SSR) markers and transcriptomic sequence based ones? If so, could you please explain the difference. …
What is fundamental difference between a sequence_feature and sequence_variant in Sequence Ontology?
written 10.4 years ago by Obi Griffith

Does anyone know what the fundamental difference is between the sequence_feature and sequence_variant ontologies? There is certainly a lot of unique content but there are …
Meaning of Chromatin state
written 10.5 years ago by Prakki Rama

Hi all, Could someone explain me the meaning of **Chromatin state** or point me to a simple definition? Some where I came across this sentence …
Repeated occurrence of a Gene Ontology term in WEGO output
written 10.5 years ago by Prakki Rama

Hi, could anyone help me know why I see a GO term output more than once in the WEGO gene ontology output? Also, I do …
Illuminia Vs 454 Coverage Spread
written 12.0 years ago by wizard-14 •

Hi all, I'm just wondering about the difference in read numbers across samples on the Illumina miseq platform. On the 454 analysis of the read …
Difference Between Limma And Bridge Packages
written 13.5 years ago by I am •

<p>Hi all,</p> <p>I am working on microarray analysis and I came across two R packages, limma and Bridge to find differential gene expression. Can some …