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difference between microsatellite markers

Hi, Is there any difference between Illimuna-genomic sequence based microsatellite (SSR) markers and transcriptomic sequence based ones? If so, could you please explain the difference.

Thanks in advance, Elvan

next-gen sequencing ssr
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written by elvanbaskurt4848 • elvanbaskurt4848

SSR from transcriptomic data? How it is possible if they are from non-coding regions? I think you can (or have) do this analysis just for reads from genomic sequences.

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written by Buffo Buffo

Please useADD REPLY to reply to earlier reactions, as such this thread remains logically structured and easy to follow. I have now moved your post, but as you can see it's not optimal.

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written by WouterDeCoster WouterDeCoster

Genomic includes non-coding regions, genic does not (even 5and 3 UTRs).

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written by Buffo Buffo

thus we can say that genic SSRs are more specific than genomic ones. However I think genomic SSRs must be more comprehensive, what I understand. Thank you.

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written by elvanbaskurt4848 • elvanbaskurt4848

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