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Finding simple sequence repeat (SSR) markers for a specific disease
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18 months ago
seta ♦ 1.2k

Hi all,

I have got Illumina sequencing reads from a healthy and diseased mouse. I want to compare the simple sequence repeats (SSR) between healthy and disease groups and discover the disease-related SSR markers. This is my first experience on this issue, so I was wondering what is the suitable pipeline for this work? any comment and suggestion would be highly appreciated.



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