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Calculation of genic and intergenic region

Hellow,

I am using CLC for assembling genome. can anyone here please tell me how to find the percentage of genic and intergenic regions in the genome.

P.S :- I already have some annotations transferred on my genome.

rna-seq next-gen gene genome

1 answer

If you have annotations, export in bed. Open in excel. Calculate the length of each gene, add them all up, divide by genome size, BOOM, done.

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