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rna seq analysis

I am a master student . I am doing my project in my university.

I am using CLC to analyse the genome to find the novel genes and splice variants. I have genome on which annotations are transferred.

i have to find those regions which are excluding those annotation regions.

Is there any script or any another way that I can get these region along with there coordinates in a different file.

Thanks in advance

rna-seq next-gen reference genome
• 1,886 views • link
updated by Ram Ram • written by kartikayprasad • kartikayprasad

1 answer

This may sound harsh, but if you're working with CLC software then it's probably best that you contact their support, because

  1. your institution is paying a lot for a licence, and
  2. they'll know their software.

There are open source tools available that this community is far more likely to give you advice on, if you choose to go down that path.

• 0 views • link
updated by Ram Ram • written by andrew.j.skelton73 andrew.j.skelton73

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